Miri Krupkin

Miri Krupkin

Structural Biology @Stanford

Publications

Miri Krupkin at pubmed.

First and *co-first author list:

  1. Comparison of Physicochemical Properties of Native Mucus and Reconstituted Mucin Gels.
    Wagner CE*, Krupkin M*, Smith-Dupont KB*, Wu CM, Bustos NA, Witten J, Ribbeck K.
    Biomacromolecules (2023). link
  2. Advances in understanding the initiation of HIV-1 reverse transcription.
    Krupkin M*, Jackson LN*, Ha B*, Puglisi EV.
    Current Opinion in Structural Biology, Volume 65, December 2020, Pages 175-183. link.
  3. Avilamycin and evernimicin induce structural changes in rProteins uL16 and CTC that enhance the inhibition of A-site tRNA binding.
    Krupkin M*, Wekselman I*, Matzov D, Eyal Z, Diskin Posner Y, Rozenberg H, Zimmerman E, Bashan A, Yonath A. Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):E6796-E6805. link.
  4. Glimpse into the origin of life: What was first, the genetic code or its products, the proteins?
    Krupkin M, Bashan A, Yonath A.
    “Why does Evolution Matter? The Importance of Understanding Evolution”, G. Trueba, ed. (Cambridge Scholars Publishing),(2014), chapter6, p. 87-100. link to chapter 6. link to book.
  5. A vestige of a prebiotic bonding machine is functioning within the contemporary ribosome.
    Krupkin M, Matzov D, Tang H, Metz M, Kalaora R, Belousoff MJ, Zimmerman E, Bashan A, Yonath A.
    Philos Trans R Soc Lond B Biol Sci. 2011 Oct 27;366(1580):2972-8. link. - Research highlight, “The chemical origins of life and its early evolution: an introduction”, Phil. Trans. R. Soc. B3662853–2856 (2011).

Contributing author list:

  1. Intelectin-2 is a broad-spectrum antimicrobial lectin.
    Dugan A, Syangtan D, Nonnecke EB, Chorghade RS, Peiffer AJ, Yao JJ, Ille-Bunn J, Sergio D, Pishchany G, Dhennezel C, Vlamakis H, Bae S, Johnson S, Ellis C, Ghosh S, Alty JW, Barnes CE, Krupkin M, Ribbeck K, Xavier R, Bevins C, and Kiessling L. Link. Submitted.
  2. 4D Crystallography Captures Transient IF1-Ribosome Dynamics in Translation Initiation. Yapici I, Dao H, Yokoi S, Krupkin M, …, Puglisi EV, Puglisi JD, Wakatsuki S, and DeMirci H. Submitted.
  3. A CH-π Interaction Is Required for Human Galectin-3 Function. Diehl RC, Chorghade JS, Keys AM, Alam MM, Early SA, Dugan AE, Krupkin M, Ribbeck K, Kulik HJ, and Kiessling LL. JACS Au (2024). Link.
  4. Human immunodeficiency virus 1 5’-leader mutations in plasma viruses before and after the development of reverse transcriptase inhibitor-resistance mutations. Nouhin J, Tzou PL, Rhee SY, Sahoo MK, Pinsky BA, Krupkin M, Puglisi JD, Puglisi EV, Shafer RW. J Gen Virol (2023). Link.
  5. Uncovering translation roadblocks during the development of a synthetic tRNA. Prabhakar A*, Krahn N*, Zhang J*, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnkovic ́A, Ehrenberg M, Puglisi EV, So ̈ll, and Puglisi J. Nucleic Acids Res (2022). Link. Journal cover.
  6. Origin of life: proto ribosome forms peptide bonds and links RNA and protein dominated worlds. Bose T, Fridkin G, Davidovich C, Krupkin M, Dinger N, Falkovich AH, Peleg Y, Agmon I, Bashan A, Yonath A. Nucleic Acids Res (2022). Link.
  7. Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus. Matzov D*, Eyal Z*, Benhamou RI, Shalev-Benami M, Halfon Y, Krupkin M, Zimmerman E, Rozenberg H, Bashan A, Fridman M, Yonath A. Nucleic Acids Res. 2017 Sep 29;45(17):10284-10292. link.
  8. The ribosomal protein uL22 modulates the shape of the protein exit tunnel. Wekselman I, Zimmerman E, Davidovich C, Belousoff M, Matzov D, Krupkin M, Rozenberg H, Bashan A, Friedlander G, Kjeldgaard J, Ingmer H, Lindahl L, Zengel JM, Yonath A. Structure. 2017 Aug 1;25(8):1233-1241.e3. Epub 2017 Jul 6. link.
  9. A novel pleuromutilin antibacterial compound, its binding mode and selectivity mechanism. Eyal Z*, Matzov D*, Krupkin M, Paukner S, Riedl R, Rozenberg H, Zimmerman E, Bashan A, and Yonath A. Sci Rep. 2016 Dec 13;6:39004. link.
  10. Ribosomal antibiotics: Contemporary challenges. Auerbach-Nevo T, Baram D, Bashan A, Belousoff M, Breiner E, Davidovich C, Cimicata G, Eyal Z, Halfon Y, Krupkin M, … Yonath A. Antibiotics (Basel). 2016 Jun 29;5(3). pii: E24. link.
  11. Structural insights into species-specific features of the ribosome from the pathogen staphylococcus aureus. Eyal Z*, Matzov D*, Krupkin M, Wekselman I, Paukner S, Zimmerman E, Rozenberg H, Bashan A, Yonath A. Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5805-14. link.
  12. A recombinant collagen–mRNA platform for controllable protein synthesis. Sun L, Xiong Y, Bashan A, Zimmerman E, Shulman Daube S, Peleg Y, Albeck S, Unger T, Yonath H, Krupkin M, Matzov D, Yonath A. Chembiochem. 2015 Jul 6;16(10):1415-9. link. Journal cover.
  13. Protoribosome by quantum kernel energy method. Huang L, Krupkin M, Bashan A, Yonath A, Massa L.
    Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):14900-5. link.
  14. The ribosome as drug target: lessons from 3D structures. Bashan A, Zimmerman E, Belousoff MJ, Rozenberg H, Davidovich C, Wekselman I, Shapira T, Krupkin M, Yonath A. Isr Chem Soc. 2010, 25, 10-18. link. Journal cover.
  15. The proto-ribosome : An ancient nano-machine for peptide bond formation. Davidovich C, Belousoff M, Wekselman I, Shapira T, Krupkin M, Zimmerman E, Bashan A, Yonath A. Isr J Chem. 2010 Jun 18;50(1):29-35. link. Journal Cover.  

* Equal contribution.

Miri Krupkin at pubmed.